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Phylogenetic Analysis
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Phylogenetic_Analysis
Molecular Evolution
Software
8
Sites in Phylogenetic Analysis
ClustalW
EBI server for multiple sequence alignment on the web
http://www.ebi.ac.uk/clustalw/
GRIMM/MGR
A tool for constructing phylogenies based on gene order for unichromosomal and multichromosomal genomes
http://nbcr.sdsc.edu/GRIMM/mgr.cgi
MultAlign
A multiple-sequence alignment program that also includes distance matrix methods for inferring trees.
http://bioinfo.genopole-toulouse.prd.fr/multalin/multalin.html
Phylogeny at Pasteur
A collection of phylogenetics programs available at Pasteur Institute. Includes a number of Phylip programs.
http://bioweb.pasteur.fr/seqanal/phylogeny/intro-uk.html
SplitsTree 2
Tool that uses split decomposition method to analyze and visualize distance data from biological sequences.
http://bibiserv.techfak.uni-bielefeld.de/splits/
TreeGen
Tree generation from distance data. [Results by email]
http://www.cbrg.ethz.ch/services/TreeGen
TreeTop
Multiple sequence alignment based phylogenetic tree prediction program.
http://www.genebee.msu.su/services/phtree_reduced.html
Vista tools
Multiple sequence alignment server and whole genome alignment database.
http://gsd.lbl.gov/vista/index.shtml
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