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Formating of multiple sequence alignments to a color postscript file. Can include graphical features by using PDB entry.
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Genome-Wide BLAST search for similarity searching against genes or proteins. Integrated with multiple alignments and phylogenetic tree capabilities.
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Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.
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This is a server for structural superfamily assignments to protein sequences using Hidden Markov Models. The services included are: -homology searching -alignments -genome assignments
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Utility for online manipulation of Blast results. Results organized in a table format.
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Software toolkit for building and using motif-based hidden Markov models of DNA and proteins. There is an online interactive version. Source written in C. [GPL]
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BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
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Commercial general homology search software significantly faster than BLAST.
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Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online.
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Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Research.
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Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.
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Open source tool for identifying serial repeats (tandem repeats) in DNA sequences.
